UMR8261 Expression Génétique Microbienne

CNRS / Université Paris Diderot Paris 7

Directeur : Harald Putzer, Directeur-adjoint : Ciarán Condon



Articles dans des revues à comité de lecture / Peer-reviewed publications

2007 - 2008 - 2009 - 2010 - 2011 - 2012 - 2013 - 2014 - 2015 - 2016 -2017


  1. Aalberts D. P.*, Boël G*, & Hunt, J. F*. (2017) Codon Clarity or Conundrum? Cell Systems 4, 16–19.*Corresponding author

  2. Beusch, I., Barraud, P.*,¶, Moursy, A., Cléry, A. & Allain, F.H.¶ (2017) Tandem hnRNP A1 RNA recognition motifs act in concert to repress the splicing of survival motor neuron exon 7. eLife, 6:e25736. *Co-first authors ¶Co-corresponding authors.

  3. Braun, F., Durand S. & Condon, C. (2017) Initiating ribosomes and a 5'/3'-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation Nucleic Acids Res. 45, 11386-11400.

  4. Durand, S., Braun, F., Helfer, A-C., Romby, P. &Condon, C. (2017) sRNA-mediated activation of gene expression by inhibition of 5'-3’ exonucleolytic mRNA degradation. eLife.

  5. Galinier, A. & Deutscher, J. (2017) Sophisticated regulation of transciptional factors by the bacterial phosphoenolpyruvate:glycose phosphotransferase system. J. Mol. Biol., 429:773-789.

  6. Guyon,H., Mavré,F.,Catala, M., Turcaud, S., Brachet,F., Limoges, B.*, Tisné, C.* & Micouin, L.* (2017) Use of Redox Probe for Electrochemical RNA-ligand Binding Assay in Microliter Droplets. Chem Comm, 53, 1140-1143. *Co-corresponding authors.

  7. Homburg, C., Bommer, M., Wuttge, S., Hobe, C., Beck, S., Dobbek, H., Deutscher, J., Licht, A. & Schneider, E. (2017) Inducer exclusion in Firmicutes: Insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr. Mol. Microbiol., doi: 10.1111/mmi.13680 [Epub ahead of print].

  8. Jagodnik,  J., Brosse, A., Le Lam, T.N., Chiaruttini, C., Guillier, M. (2016) Mechanistic study of base-pairing small regulatory RNAs in bacteria. Methods 117: 67-76, doi: 10.1016/j.ymeth.2016.09.012..

  9. Jagodnik, J., Chiaruttini, C. & Guillier, M. (2017) Stem-loop structures within mRNA coding sequences activate translation initiation and mediate control by small regulatory RNAs. Molecular Cell 68(1): 158-170.

  10. Joyet, P., Mokhtari, A., Riboulet-Bisson, E., Blancato, V. S., Espariz, M., Magni, C., Hartke, A.*, Deutscher, J.* & Sauvageot, N. (2017) The enzymes catalyzing the catabolism of maltodextrins in Enterococcus faecalis. Appl. Env. Microbiol., doi: 10.1128/AEM00038-17. *Corresponding authors

  11. Hamouche L., Laalami S., Daerr A., Song S., Holland I.B., Séror S.J., Hamze K. & Putzer H. (2017) Bacillus subtilis swarmer cells lead, multiply and generate a trail of ‘quiescent’ descendants. MBio 8, e02102-16.

  12. Le Lam, T.N., Morvan, C., Liu, W., Bohn, C., Jaszczyszyn, Y. & Bouloc, P., (2017) Finding sRNA-associated phenotypes by competition assays : An example with Staphylococcus aureus. Methods 117, 21-27.

  13. Leroy,* M., Piton*, J., Gilet, L., Pellegrini, O., L., Proux, C., Coppée, J-Y., Figaro, S. & Condon, C. (2017) Rae1 (YacP), a new endoribonuclease involved in ribosome-dependent mRNA decay in B. subtilis. EMBO. J. 36, 1167-1181 *Co-first authors.

  14. Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O, Durand, D., Marchfelder, A., Condon, C. & van Tilbeurgh, H. (2017) The crystal structure Trz1, the long form tRNase Z from yeast. Nucleic Acids Res.

  15. Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Lepault, J. Condon, C., Durand, D. & van Tilbeurgh, H. (2017) Trz1, the long form RNase Z from yeast, forms a stable heterohexamer with endonuclease Nuc1 and mutarotase. Biochemistry. 474, 3599–3613

  16. Maes, A., Gracia, C., Innocenti, N., Zang, K., Aurell, E.  & Hajnsdorf, E.(2016) Landscape of RNA polyadenylation in E. coli. Nucleic Acids Res. 45, 2746-2756

  17. Oerum, S., Dégut, C., Barraud, P. & Tisné, C.* (2017) m1A post-transcriptional modification in tRNAs. Biomolecules, 2017 Feb 21;7(1). pii: E20. doi: 10.3390/biom7010020..

  18. Samatanga, B., Cléry, A.,Barraud, P., Allain, F. H. & Jelesarov, I. (2017) Comparative analyses of the thermodynamic RNA binding signatures of different types of RNA recognition motifs. Nucleic Acids Res. 45, 6037–6050.

  19. Sauvageot, N., Mokhtari, A., Joyet, P., Budin-Verneuil, A., Blancato, V.S., Repizo, G., Henry, C., Pikis, A., Thompson, J., Magni, C., Hartke, A.* & Deutscher, J.* (2017) Enterococcus faecalis uses a PTS permease and a host colonization-related ABC transporter for maltodextrin uptake. J. Bacteriol., 199:e00878-16 (2017). *Corresponding authors

  20. Sevaille, L., Gavara, L., Bebrone, C., De Luca, F., Nauton, L., Achard, M., Mercuri, P., Lonjon, P., Guyon, C., Turan-Zitouni, G., Dzieciolowski, J., Becker, K., Bénard, L., Condon, C., Maillard, L., Martinez, J., Frère, J-M., Dideberg, O., Galleni, M., Docquier, J-D. & J-F. Hernandez (2017) 1,2,4-Triazole-3-thione compounds as inhibitors of di-zinc metallo-β-lactamases. ChemMedChem. 12, 972-985.

  21. 2016

  22. Álvarez-Añorve, L., Gaugué, I., Link, H., Marcos-Viquez, J., Díaz-Jiménez ,D.M., Zonszein, S., Bustos-Jaimes, I., Schmitz-Afonso, I., Calcagno, M.L., Plumbridge, J.(2016) "Allosteric Activation of Escherichia coli Glucosamine-6-Phosphate Deaminase (NagB) In Vivo Justified by Intracellular Amino Sugar Metabolite Concentrations." J. Bacteriol. ;198(11):1610-20. doi: 10.1128/JB.00870-15. Print 2016 Jun 1.

  23. Antunes, A., Derkaoui, M., Terrade, A., Denizon, M., Deghmane, A.-E., Deutscher, J., Delany, I. & Taha, M.-K.* (2016) The phosphocarrier protein HPr contributes to meningococcal survival during infection. PLoS ONE, 11:e0162434. doi: 10.1371/journal.pone.0162434.

  24. Boël, G., Letso R. Neely H., Price W.N., Wong K-H., Su M., Luff J., Valecha M., Everett J., Acton T, Xiao R., Montelione G.T., Aalberts D.P., and Hunt J.F. (2016) Codon influence on protein expression in E. coli correlates with mRNA level. Nature 529, 358-363

  25. Brosse, A., Korobeinikova, A., Gottesman, S. & Guillier, M. (2016) Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system. Nucleic Acids Res. 44, 9650-9666.

  26. Derkaoui, M., Antunes, A., Nait-Abdallah, J., Poncet, S., Mazé, A., Ma Pham, Q.M., Mokhtari, A., Joyet, P., Deghmane, A.-E., Taha, M.-K.,* & Deutscher, J.* (2016) Transport and catabolism of carbohydrates by Neisseria meningitidis. J. Mol. Microbiol. Biotechnol., 26:320-332. *Corresponding authors

  27. Derkaoui, M., Antunes, A., Poncet, S., Nait-Abdallah, J., Joyet, P., Mazé, A., Henry, C., Taha, M.-K. & Deutscher, J.* & A.-E. Deghmane* (2016) The phosphocarrier protein HPr of Neisseria meningitidis interacts with the transcription regulator CrgA and its deletion affects capsule production, cell adhesion and virulence. Mol. Microbiol., 100:788-807

  28. DiChiara, J.M., Figaro, S., Liu, B., Condon, C. & Bechhofer, D.H. (2016) Mapping of internal monophosphate 5’ ends of Bacillus subtilis messenger RNAs and ribosomal RNAs in wild-type and ribonuclease-mutant strains. Nucleic Acids Res. 44, 3373-3389. doi: 10.1093/nar/gkw073.

  29. Fontaine, F., Gasiorowski, E., Gracia, C., Ballouche, M., Caillet, J., Marchais, A. & Hajnsdorf, E. (2016) The small RNA SraG participates in PNPase homeostasis. RNA 22, 1560–1573.

  30. Kentache, T., Milohanic, E.*, Cao, T. N., Mokhtari, A., Aké, F.M.D., Ma Pham Q.M., Joyet, P. & Deutscher, J.* (2016) Transport and catabolism of pentitols by Listeria monocytogenes. J. Mol. Microbiol. Biotechnol., 26:369-380. *Corresponding authors

  31. Le Pen, J., Maillet, L., Sarosiek, K., Vuillier, C., Gautier, F., Montessuit, S., Martinou, J.-C., Letai, A., Braun, F. & Juin, Ph. (2016) Constitutive p53 heightens mitochondrial apoptotic priming and favors cell death induction by BH3 mimetic inhibitors of BCL-xL. CDDIS 7, e2083; doi:10.1038/cddis.2015.400

  32. Muranaka, LS., Rütgers, M., Bujaldon, S., Heublein, A., Geimer, S., Wollman, F.A. & Schroda, M. (2016) TEF30 Interacts with Photosystem II Monomers and Is Involved in the Repair of Photodamaged Photosystem II in Chlamydomonas reinhardtii. Plant Physiol. 170, 821-40.

  33. Pécot, J., Maillet, L., Le Pen, J., Vuillier, C., de Carné Trécesson, S., Fétiveau, A., Sarosiek, K., Bock, F. J., Braun, F., Letai, A., Tait, S.W.G., Gautier, F. & Juin, Ph. (2016) Tight sequestration of BH3 proteins by BCL-xL at subcellular membranes contributes to apoptotic resistance. Cell reports 17, 3347–3358.

  34. Ruiz-Larrabeiti, O., Hernández, A., Gracia, C., Sevillano, E., Gallego, L., Hajnsdorf, E. & Kaberdin, V. (2016) A new custom microarray for sRNA profiling in Escherichia coli. FEMS Microbiology Letters 363, (13), doi 10.1093/femsle/fnw131. Editor's choice


  35. Banroques, J., & Tanner N. K. (2015) Bioinformatics and Biochemical Methods to Study the Structural and Functional Elements of DEAD-Box RNA Helicases. Methods Mol Biol 1259, 165-181.

  36. Bizebard, T., & Dreyfus, M. (2015)A FRET-based, continuous assay for the helicase activity of DEAD-box proteins. Methods Mol. Biol. 1259, 165-181.

  37. Bréchemier-Baey, D., Dominguez-Ramirez, L., Oberto, J. & Plumbridge, J. (2015) Operator recognition by the ROK transcription factor family members, NagC and Mlc. Nucleic Acids Res. 43, 361-372.

  38. Bréchemier-Baey, D., Pennetier, C. & Plumbridge J. (2015) Dual Inducer recognition by an Mlc homologue. Microbiology 161, 1694-1706.

  39. Celik, A, Kervestin, S, & Jacobson A. (2015) NMD : at the crossroads between translation termination and ribosome recycling. Biochimie 114, 2-9.

  40. Durand, S., Braun, F., Lioliou, E., Romilly, C., Helfer, A-C., Kuhn, L., Quittot, N., Nicolas, P., Romby, P.* & C. Condon*(2015) A nitric oxide regulated small RNA controls expression of genes involved in redox homeostasis in Bacillus subtilis. PLoS Genetics. *Co-corresponding authors. DOI:10.1371/journal.pgen.1004957

  41. Durand, S., Tomasini, A., Braun, F., Condon, C.*, and P. Romby*(2015)sRNA and mRNA turnover in Gram-positive bacteria. FEMS Micro Reviews 39, 316-330. *Co-corresponding authors

  42. Gilet, L, DiChiara, J. M., Figaro, S., Bechhofer, D. H. & Condon, C. (2015) Small stable RNA maturation and turnover in Bacillus subtilis. Mol. Microbiol. 95, 270-282.

  43. Hamouche, L., Laalami, S., Lakkis, G., Kobaissi, A., Chokr, A., Putzer, H., & Hamze, K. (2015) The effect of chemotaxis on the swarming ability of Bacillus subtilis : critical effect of glutamic acid and lysine. Int. J. Sci. Tec. Res. 4, 14-21. 

  44. Hotto, A. M., Castandet, B., Gilet, L., Higdon, A. Condon, C. & D.B. Stern (2015) Arabidopsis chloroplast Mini-Ribonuclease III participates in rRNA maturation and intron recycling. Plant Cell. 27, 724-740.

  45. Indrisiunaite, G., Pavlov, M. Y., Heurgué-Hamard, V., Ehrenberg, M.(2015)On the pH dependence of class-1 RF-dependent termination of mRNA translation. J. Mol. Biol. 427, 1848-1860.

  46. Joyet, P., Derkaoui, M., Bouraoui, H. & Deutscher, J. (2015) PTS-mediated regulation of the transcription activator MtlR from different organisms: surprising differences despite strong sequence conservation. J. Mol. Microbiol. Biotechnol. 25, 94-105.

  47. Mijakovic, I. & Deutscher, J.(2015)Protein-tyrosine phosphorylation in Bacillus subtilis: a ten-years retrospective. Front. Microbiol. 6, doi10.3389/fmicb.2015.00018

  48. Mora, L., Moncoq, K., England, P., Oberto, J. & de Zamaroczy, M. (2015) The stable interaction between signal-peptidase LepB of Escherichia coli and nuclease bacteriocins promotes toxin entry into the cytoplasm. J Biol Chem. 2015 Dec 25;290(52):30783-96. doi: 10.1074/jbc.M115.691907. Epub 2015 Oct 23.

  49. Plumbridge, J.(2015) Regulation of the utilization of amino sugars by E. coli and B. subtilis : same genes, different control. J. Mol Microbiol. Biotechnol. 25, 154-167.

  50. Roque, S., Cerciat, M., Gaugué, I., Mora, L., Floch, A., de Zamaroczy, M., Heurgué-Hamard, V. & Kervestin, S. (2015) Interaction between the poly(A)-binding protein Pab1 and the eukaryotic release factor eRF3 regulates translation termination but not mRNA decay in Saccharomyces cerevisiae. RNA 21, 124-134.

  51. Zébré, A., Aké, F.M.D., Ventroux, M., Noirot-Gros, M.-F., Nevry, K. R., Deutscher, J. & Milohanic, E.(2015) Interaction with EIIBMpo and phosphorylation by P~EIIBMpo exert antagonistic effects on the transcription activator ManR of Listeria monocytogenes. J. Bacteriol. 197, 1559-1572 (2015).

  52. Zorbas, C., Nicolas, E., Wacheul, L., Huvelle, E., Heurgué-Hamard, V. & Lafontaine D.L.J. (2015) The human 18S rRNA base methyltransferases DIMT1L and WBSCR22-TRMT112 but not rRNA modification are required for ribosome biogenesis. Mol. Biol. Cell. 26, 2080-2095.

  53. 2014

  54. Boudry, P., Gracia, C., Monot, M., Caillet, J., Saujet, L., Hajnsdorf, E., Dupuy, B., Martin-Verstraete, I. & Soutourina, O. (2014) Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile. J. Bacteriol. 196, 3234-3248.

  55. Caillet, J., Gracia, C., Fontaine, F. & Hajnsdorf E. (2014) Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function. RNA 20, 1567-1578.

  56. Deutscher, J., Aké, F. M., Derkaoui, M., Zébré, A. C., Cao, T. N., Bouraoui, H., Kentache, T., Mokhtari, A., Milohanic, E. & Joyet, P. (2014) The bacterial phosphoenolpyruvate:carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions. Microbiol. Mol. Biol. Rev. 78, 231-256.

  57. Fourati, Z., Roy, B., Millan, C., Coureux, P. D., Kervestin, S, van Tilbeurgh H. He. F., Usón, I., Jacobson, A., & Graille M. (2014) A Highly Conserved Region Essential for NMD in the Upf2 N-Terminal Domain. J. Mol. Biol. 426, 3689-36702.

  58. Gaugué I., Oberto J, Plumbridge J. (2014) Regulation of amino sugar utilisation in Bacillus subtilis by the GntR family regulators, NagR and GamR. Mol. Microbiol. 92: 100-115

  59. Hammann, P., Parmentier, D., Cerciat, M., Reimegard, J., Helfer, A. C., Boisset, S., Guillier, M., Vandenesch, F., Wagner, E. G., Romby, P. & Fechter, P. (2014) A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus. Biochimie 106, 175-179.

  60. Jamalli A, Hébert A., Zig L. and H. Putzer (2014). Control of expression of the ribonucleases J1 and J2 in B. subtilis. J. Bacteriol., 196, 318-324.

  61. Laalami S., Zig L. and H. Putzer (2014). Initiation of mRNA decay in bacteria. Cell Mol Life Sci. 71, 1799-1828.

  62. Létoquart, J.*, Huvelle, E.*, Wacheul, L.*, Bourgeois, G., Zorbas, C., Graille, M#., Heurgué-Hamard, V.# & Lafontaine D. L. J.# (2014) Structural and functional studies of Bud23-Trm112 reveal 18S rRNA N7-G1575 methylation occurs on late 40S precursor ribosomes. Proc. Natl. Acad. Sci. 111, E5518-E5526. *Co-first authors #Co-corresponding authors.

  63. Liu, B., Deikus, G., Bree, A., Durand, S., Kearns, D. B. & Bechhofer, D. H. (2014) Global analysis of mRNA decay intermediates in Bacillus subtilis wild type and polynucleotide phosphorylase-deletions strains. Mol Microbiol. 94, 41-55.

  64. Misra, S. K., Aké, F. M. D., Wu, Z., Milohanic, E., Cao, T. N., Cossart, P., Deutscher, J., Monnet, V., Archambaud, C. & Henry, C. (2014) Quantitative proteome analyses identify PrfA-responsive proteins and phosphoproteins in Listeria monocytogenes. J. Proteome Res., 13, 6046–6057.

  65. Mora, L. & de Zamaroczy, M. (2014) In vivo processing of DNase colicins E2 and E7 is required for their import into the cytoplasm of target cells. PloS One 9(5) : e96549.

  66. Mota, S., Vieira, N., Barbosa, S., Delaveau, T., Torchet, C., Le Saux, A., Garcia, M., Pereira, A., Lemoine, S., Coulpier, F., Darzacq, X., Benard, L., Casal, M., Devaux, F., Paiva, S. (2014) Role of the DHH1 gene in the regulation of monocarboxylic acids transporters expression in Saccharomyces cerevisiae. PLoS One 9(11):e111589.

  67. Plumbridge, J., Bossi, L., Oberto, J., Wade, J. T., & Figueroa-Bossi, N. (2014) Interplay of transcriptional and small RNA-dependent control mechanisms regulates chitosugar uptake in Escherichia coli and Salmonella. Mol. Microbiol. 92, 648-658.

  68. Senissar, M., Le Saux, A., Belgareh-Touzé, N., Adam, C.,Banroques, J. & Tanner, N.K. (2014) The DEAD-box helicase Ded1 from yeast is an mRNP cap-associated protein that shuttles between the cytoplasm and nucleus. Nucl. Acids Res. 42, 10005-22.


  69. Barhoumi, M., Meddeb-Garnaoui, A., Tanner, N. K., Banroques, J., Kaabi, B., Guizani, I. (2013) DEAD-box proteins, like Leishmania eIF4A, modulate interleukin (IL)-12, IL-10 and tumour necrosis factor-alpha production by human monocytes. Parasite Immunol. 35(5-6), 194-199. doi: 10.1111/pim.12026.

  70. Bertin-Ciftci J, Barré B, Le Pen J, Maillet L, Couriaud C, Juin P, Braun F. (2013) pRb/E2F-1-mediated caspase-dependent induction of Noxa amplifies the apoptotic effects of the Bcl-2/Bcl-xL inhibitor ABT-737. Cell Death Differ. 2013 May;20(5):755-64

  71. Bos J., Duverger Y., Thouvenot B., Chiaruttini C., Branlant C., Springer M., Charpentier B. & Barras F. (2013) The sRNA RyhB regulates the synthesis of the Escherichia coli methionine sulfoxide reductase MsrB but not MsrA, PLoS One, 8(5): e63647.

  72. Bourand, A., Yebra, M.-J., Boël, G., Mazé, A. & Deutscher, J. (2013) Ribitol utilization by Lactobacillus casei BL23 requires a mannose-type phosphotransferase system and three metabolic enzymes. J. Bacteriol. 195, 2652-2661.

  73. Bouraoui H, Ventroux M, Noirot-Gros MF, Deutscher J, Joyet P.(2013). Membrane sequestration by the EIIB domain of the mannitol permease MtlA activates the Bacillus subtilis mtl operon regulator MtlR. Mol Microbiol. 2013 Feb;87(4):789-801.

  74. Bubunenko, M., Court, D.L., Al Refaii, A., Saxena, S., Korepanov, A., Friedman, D.I., Gottesman M.E. & Alix, J.-H. (2013) Nus transcription elongation factors and RNase III modulate small ribosome subunit biogenesis in E.coli. Mol. Microbiol. 87, 382-393.

  75. Coornaert A., Chiaruttini C., Springer M. & Guillier M. (2013) Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB. PLoS Genet, 9(1):e1003156.

  76. Cournac  A,  Plumbridge J. (2013) DNA looping in prokaryotes:experimental and theoretical approaches. J. Bacteriol.  195: 1109-1119

  77. Duval, M., Korepanov, A., Fuchsbauer, O., Fechter, P., Haller, A., Fabbretti, A., Choulier, L., Micura, R., Klaholz, B. P., Romby, P., Springer, M. & Marzi, S. (2013). Escherichia coli ribosomal protein S1 unfolds structured mRNAs onto the ribosome for active translation initiation. PLoS Biol 11, e1001731.

  78. Figaro, S.*, Durand, S.*, Gilet, L., Cayet, N., Sachse, M. & Condon C. (2013) Knockouts of the genes encoding ribonucleases RNase Y and J1 are viable in B. subtilis, with major defects in cell morphology, sporulation and competence. J. Bact. 195, 2340-2348. * Co-first authors.

  79. Gaugué, I., Oberto, J., Putzer, H. & Plumbridge, J. (2013) The use of amino sugars by Bacillus subtilis : presence of a unique operon for the catabolism of glucosamine. PloS One 8(5) : e63025

  80. Iost, I., Bizebard, T., & Dreyfus, M. (2013) Functions of DEAD-box proteins in bacteria: Current knowledge and pending questions. Biochim Biophys Acta, 1829:866-877.

  81. Joyet, P., Bouraoui, H., Aké, F.M.D., Derkaoui, M., Zébré, A.C., Cao, M.T.N., Ventroux, M., Nessler, S., Noirot-Gros, M.-F., Deutscher, J. & Milohanic, E. (2013) Transcription regulators controlled by interaction wih enzyme IIB components of the phosphoenolpyruvate:sugar phosphotransferase system. Biochim. Biophys. Acta, 1834,1415-1424

  82. Laalami, S., Bessières, P., Rocca, A., Zig, L., Nicolas, P. & Putzer, H.(2013) Bacillus subtilis RNase Y activity in vivo analysed by tiling microarrays. PloS One 8(1) : e54062.

  83. Maes, A., Gracia,C.,  Bréchemier-Baey, D., Hamman, P., Chatre, E., Lemelle, L., Bertin, P. N. & Hajnsdorf, E. (2013) Role of polyadenylation in regulation of the flagella cascade and motility in E. coli. Biochimie, 95, 410-418.

  84. Mandin P. & Guillier M. (2013) Expanding control in bacteria: interplay between small RNAs and transcriptional regulators to control gene expression. Current Opinion in Microbiology 16(2), 125-132.

  85. Mokhtari, A.,Blancato, V.S., Repizo, G., Henry, C., Pikis, A.,, Bourand, A., de F. Alvarez, M., Immel, S.,Hartke, A., Thompson, J., Magni, C., Deutscher, J. (2013) Enterococcus faecalis utilizes maltose by connecting two incompatible metabolic routes via a novel maltose-6’-P phosphatase (MapP). Mol. Microbiol. 88, 234-25.

  86. Piton, J., Larue, V., Thillier, Y., Dorléans, A., Pellegrini, O., Li de la Sierra-Gallay, I., Vasseur, J. J., Debart, F., Tisné, C. & Condon, C. (2013) The B. subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates. Proc. Natl. Acad. Sci. USA, 110 8858-8863.

  87. Régnier, Ph. &  Hajnsdorf,  E. (2013) The interplay of Hfq, poly(A) polymerase I and exoribonucleases at the 3' ends of RNAs resulting from Rho-independent termination: a tentative model. RNA Biology 10(4), 602-609.

  88. Schroeter, R., Hoffman, T., Voigt, B., Meyer, H., Bleisteiner, M., Muntel, J., Jürgen B., Albrecht, D., Becher, D., Lalk, M., Evers, S., Bongaerts, J., Maurer, K., Putzer, H., Hecker, M., Schweder, T. & Bremer, E. (2013) Stress responses of the industrial workhorse Bacillus licheniformis to osmotic challenges. PloS One 8(11) : e80956

  89. 2012

  90. Bréchemier-Baey, D., Dominguez-Ramirez, L. & Plumbridge, J. (2012) The linker sequence, joining the DNA-binding domain of the homologous transcription factors, Mlc and NagC, to the reste of the protein, determines the specificity of their DNA target recognition in Escherichia coli. Mol Microbiol, 85, 1007-1019

  91. Durand, S., Gilet, L., Bessières, P., Nicolas, P. & Condon, C. (2012) Three essential ribonucleases RNase Y, J1 and III control the abundance of a majority of B. subtilis mRNAs. PLoS Genet 8(3): e1002520.

  92. Durand, S., Gilet, L. & Condon, C. (2012) The essential function of B. subtilis RNase III is to silence foreign toxin genes. PLoS Genet 8(12): e1003181.

  93. Durand, S., Jahn, N., Condon, C.* & Brantl, S.*, co-corresponding authors (2012) Type I toxin-antitoxin systems in B. subtilis. RNA Biology 9, 1491-1497.  * Co-corresponding authors.

  94. Figaro, S., Wacheul, L., Schillewaert, S., Graille, M., Huvelle, E., Mongeard, R., Zorbas, C., Lafontaine, D., & Heurgué-Hamard, V. (2012) Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575. Mol Cell Biol, 32, 2254-2267.

  95. Graille, M., Figaro, S., Kervestin, S., Buckingham, R. H., Liger, D., & Heurgué-Hamard, V. (2012) Methylation of class I translation termination factors: Structural and functional aspects, Biochimie, 94, 1533-1543.

  96. Hajnsdorf, E. & Boni, I. V. (2012) Multiple activities of RNA-binding proteins S1 and Hfq. Biochimie 94, 1544-1553.

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  145. Fang, M., Zeisberg, W-M., Condon, C., Ogryzko, V., Danchin, A. & Mechold, U. (2009) Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis. Nucleic Acids Res. 37, 5114-5125.

  146. Oberto, J., Nabti, S., Jooste, V., Mignot, H. & Rouvière-Yaniv, J. (2009) The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction. PLoS One 4, e4367.

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  152. Timsit, Y., Acosta, Z., Allemand, F., Chiaruttini, C. & Springer, M. (2009) The role of disordered ribosomal protein extensions in the early steps of eubacterial 50 s ribosomal subunit assembly. Int. J. Mol. Sci. 10, 817-834.

  153. Trubetskoy D., Proux F., Allemand F., Dreyfus M. & Iost I. (2009) SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo. Nucleic Acids Res. 37, 6540-6549.

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  158. Deikus, G., Condon, C. & Bechhofer, D. H. (2008) Role of Bacillus subtilis RNase J1 endonuclease and 5’-exonuclease activities in trp leader mRNA turnover. J. Biol. Chem. 283, 17158-17167.

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  169. Reichenbach, B., Maes, A., Kalamorz, F., Hajnsdorf, E. & Görke, B. (2008) The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli. Nucleic Acids Res. 36, 2570–2580.

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