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Presentation of the laboratory

Research Domains

Laboratory Publications

Scientific Instrumentation

University Relations

Jobs

People/Oganization chart


Links :

ChlamyStation : Collection de mutants de photosynthèse de Chlamydomonas

PredAlgo : Prédiction d'adressage intracellulaire chez les algues

IBPC : Institut de Biologie Physico-Chimique

LabEx DYNAMO

 

Other publications from lab members

 Benjamin Bailleul

 Alix Boulouis

 Ingrid Lafontaine

Benjamin Bailleul

2017

Massoz S, Hanikenne M, Bailleul B, Coosemans N, Radoux M, Miranda-Astudillo H, Cardol P, Larosa V and Remacle C (2017) In vivo chlorophyll fluorescence screening allows the isolation of a Chlamydomonas mutant defective for NDUFAF3, an assembly factor involved in mitochondrial complex I assembly. Plant J.

Bailleul B, Park J, Brown C M, Bidle K D, Lee S H & Falkowski P G (2017) Direct measurements of the light dependence of gross photosynthesis and oxygen consumption in the ocean. Limnology and Oceanography, 62(3), 1066-1079.

Park J, Kuzminov F I, Bailleul B, Yang E J, Lee S, Falkowski P G and Gorbunov M Y (2017) Light availability rather than Fe controls the magnitude of massive phytoplankton bloom in the Amundsen Sea polynyas, Antarctica, Limnology and Oceanography

2015

Godaux D, Bailleul B, Berne N, Cardol P (2015) Induction of Photosynthetic Carbon Fixation in Anoxia Relies on Hydrogenase Activity and Proton-Gradient Regulation-Like1-Mediated Cyclic Electron Flow in Chlamydomonas reinhardtii. Plant Physiology 168: 648-658

2014

Roberty S, Bailleul B, Berne N, Franck F, Cardol P (2014) PSI Mehler reaction is the main alternative photosynthetic electron pathway in Symbiodinium sp., symbiotic dinoflagellates of cnidarians. New Phytologist 204: 81-91

Massoz S, Larosa V, Plancke C, Lapaille M, Bailleul B, Pirotte D, Radoux M, Leprince P, Coosemans N, Matagne RF, Remacle C, Cardol P (2014) Inactivation of genes coding for mitochondrial Nd7 and Nd9 complex I subunits in Chlamydomonas reinhardtii. Impact of complex I loss on respiration and energetic metabolism. Mitochondrion 19, Part B: 365-374
Alix Boulouis

2015

Pinhassi RI, Kallmann D, Saper G, Larom S, Linkov A, Boulouis A, Schöttler M-A, Bock R, Rothschild A, Adir N, Schuster G (2015) Photosynthetic Membranes of Synechocystis or Plants Convert Sunlight to Photocurrent through Different Pathways due to Different Architectures. PLOS ONE 10(4): e0122616

Schöttler MA, Tóth SZ, Boulouis A, Kahlau S (2015) Photosynthetic complex stoichiometry dynamics in higher plants: biogenesis, function, and turnover of ATP synthase and the cytochrome b6f complex. J Exp Bot, 66: 2373-2400

2014

Idoine AD, Boulouis A, Rupprecht J, Bock R (2014) The Diurnal Logic of the Expression of the Chloroplast Genome in Chlamydomonas reinhardtii. PLOS ONE 9(10): e108760
Ingrid Lafontaine

2017

Vakirlis N, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. 2017 Mar 23. A Molecular Portrait Of De Novo Genes. bioRxiv:119768. doi:10.1101/119768.

2016

Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel J-P, Blanpain L, Carbone A, Devillers H, Dubois K, et al. 2016. Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus. Genome Res 26: 918–932.

2015

Thierry A, Khanna V, Créno S, Lafontaine I, Ma L, Bouchier C, Dujon B. 2015. Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes. Nature Communications 6.

Gillet-Markowska A, Richard H, Fischer G, Lafontaine I. 2015. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries. Bioinformatics 31: 801–808.

Lafontaine I, Exploring the fuzzy side of DNA,  mémoire d’Habilitation à Diriger des Recherches, Université Pierre et Marie Curie, soutenue le 10 juillet 2015.

2014

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, et al. 2014. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnology for Biofuels 7: 66.

2010

Lafontaine I, Dujon B. 2010. Origin and fate of pseudogenes in hemiascomycetes: a comparative analysis. BMC Genomics 11: 260.

2009

Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, et al. 2009. Comparative genomics of protoploid Saccharomycetaceae. Genome Res 19: 1696–709.

2008

Moyrand F, Lafontaine I, Fontaine T, Janbon G. 2008. UGE1 and UGE2 Regulate the UDP-Glucose/UDP-Galactose Equilibrium in Cryptococcus neoformans. Eukaryotic Cell 7: 2069–2077.

Sacerdot C, Casaregola S, Lafontaine I, Tekaia F, Dujon B, Ozier-Kalogeropoulos O. 2008. Promiscuous DNA in the nuclear genomes of hemiascomycetous yeasts. FEMS Yeast Research 8: 846–857.

2006

Marck C, Kachouri-Lafond R, Lafontaine I, Westhof E, Dujon B, Grosjean H. 2006. The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Research 34: 1816–1835.

2005

Richard G-F, Kerrest A, Lafontaine I, Dujon B. 2005. Comparative Genomics of Hemiascomycete Yeasts: Genes Involved in DNA Replication, Repair, and Recombination. Mol Biol Evol 22: 1011–1023.

Fabre E, Muller H, Therizols P, Lafontaine I, Dujon B, Fairhead C. 2005. Comparative Genomics in Hemiascomycete Yeasts: Evolution of Sex, Silencing, and Subtelomeres. Mol Biol Evol 22: 856–873.

2004

Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, de Montigny J, Marck C, Neuvéglise C, Talla E, et al. 2004. Genome evolution in yeasts. Nature 430: 35–44.

Lafontaine I, Fischer G, Talla E, Dujon B. 2004. Gene relics in the genome of the yeast Saccharomyces cerevisiae. Gene 335: 1–17.

Boyer J, Badis G, Fairhead C, Talla E, Hantraye F, Fabre E, Fischer G, Hennequin C, Koszul R, Lafontaine I, et al. 2004. Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae. Genome Biology 5: R72.

2001

Lafontaine I, Lavery R. 2001. High-speed Molecular Mechanics Searches for Optimal DNA Interaction Sites. Combinatorial Chemistry & High Throughput Screening 4: 707–717.

2000

Lafontaine I, Lavery R. 2000a. ADAPT: A molecular mechanics approach for studying the structural properties of long DNA sequences. Biopolymers 56: 292–310.

Lafontaine I, Lavery R. 2000b. Optimization of Nucleic Acid Sequences. Biophys J 79: 680–685.

1999

Lafontaine I, Lavery R. 1999. Collective variable modelling of nucleic acids. Current Opinion in Structural Biology 9: 170–176.

1994

Muscatine L, Gates RD, Ingrid L. 1994. Do symbiotic dinoflagellates secrete lipid droplets? Limnol Oceanogr 39: 925–929.


 
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